Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▲ | PubMed ID |
|---|---|---|---|---|---|---|---|
|
66-kDa subunit
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Human buccal epihelial cells (BECs)
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Type 4-pili
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Epithelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
P-pili
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Epithelial cells in human urinary tract
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Verotoxin (1; B-subunit)
|
CD77 (Globotriaosylceramide; Gb3)
|
Oligoglycosylceramides
|
Germinal center B lymphocytes, Burkitt's lymphoma cells
|
Gal(a1-4)Gal
|
Binding
|
||
|
Unknown
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Chinchilla tracheal epithelium
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
36-kDa proteins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Mucos membranes of the genitourinary tract/rectum/oropharynx/conjunctiva
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Whole dog small intestine
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Dog small intestine
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
Fucosyl Asialo GM1
|
Oligoglycosylceramides
|
Mouse small intestine
|
Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Guinea pig erythrocytes
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
Displaying entries 121 - 130 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
