PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▼ | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Sfbl (Antigen I/II)
|
Fibronectin
|
Glycoproteins
|
Respiratory endothelial cells
|
Binding
|
|||
CRD (carbohydrate recognition domain) of Fha (Filamentous Hemagglutinin)
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Respiratory ciliated cells, Alveolar macrophages
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
PGCs (polyglycosyl ceramides)
|
Glycosphingolipids
|
Rat small intestine, Wild boar intestine, Monkey intestine
|
Binding
|
|||
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Rat small intestine
|
[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
B subunit
|
isoGb4 (Isoglobotetraosylceramide; iGb4)
|
Oligoglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
B subunit
|
Gal-Gb3
|
Oligoglycosylceramides
|
Rat small intestine
|
Gal(a1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Rat small intestine
|
[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
B subunit
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Not Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01