Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▼ | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Sfbl (Antigen I/II)
|
Fibronectin
|
Glycoproteins
|
Respiratory endothelial cells
|
Binding
|
|||
|
CRD (carbohydrate recognition domain) of Fha (Filamentous Hemagglutinin)
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Respiratory ciliated cells, Alveolar macrophages
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
PGCs (polyglycosyl ceramides)
|
Glycosphingolipids
|
Rat small intestine, Wild boar intestine, Monkey intestine
|
Binding
|
|||
|
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Rat small intestine
|
[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
B subunit
|
isoGb4 (Isoglobotetraosylceramide; iGb4)
|
Oligoglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
B subunit
|
Gal-Gb3
|
Oligoglycosylceramides
|
Rat small intestine
|
Gal(a1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Rat small intestine
|
[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
B subunit
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Not Binding
|
Displaying entries 121 - 130 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
