PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▲ | PubMed ID |
---|---|---|---|---|---|---|---|
PapG (class II)
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Human erythrocytes
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Mucos membranes of the genitourinary tract/rectum/oropharynx/conjunctiva
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Human epithelial cells (respiratory tract)
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
F1C
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Cat intestine
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
CbpA; SpsA; PbcA; PspC (CBPs)
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Cytokine activated epithelial and endothelial cells
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Lectin-like proteins (adhesin)
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Gonorrhoeae patients
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Lectin-like proteins (adhesin)
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Gonorrhoeae patients
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
exoenzyme S
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Epithelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Human erythrocytes, Human uroepithelial cells
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Lectin-like proteins (adhesin)
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Human skin
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01