PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▼ | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
20K-fimbriae
|
GlcNAc sequence
|
Saccharides
|
Human colon carcinoma Caco-2 cell line
|
GlcNAc
|
Binding
|
||
Type 2-fimbriae
|
β-linked galactosamine
|
Saccharides
|
Plaque
|
GalNAc(b 2:2
|
Binding
|
||
18-kDa fimbrial adhesin
|
Galactose derivatives
|
Saccharides
|
HEp-2 cells
|
Gal
|
Binding
|
||
F1C
|
unnamed ligand
|
Saccharides
|
Urine
|
GalNAc(b1-4)Gal(b
|
Binding
|
||
EfaA (Lary family)
|
L-Fucose-containing residues
|
Saccharides
|
Fuc
|
Binding
|
|||
F1C
|
β-GalNac-1,4-β-Gal-containing structures
|
Saccharides
|
GalNAc(b1-4)Gal(b
|
Binding
|
|||
Unknown
|
unnamed ligand
|
Saccharides
|
GlcNAc(b1-3)Gal
|
Binding
|
|||
CBPs (carbohydrate-binding proteins)
|
High mannose glycans containig the Manα1-2Manα1-6Manα1-6 structure
|
Saccharides
|
Man(a1-2)Man(a1-6)Man(a1-6)
|
Binding
|
|||
Unknown
|
Terminal N-Acetylgalactosamine residue in an alpha linkage
|
Saccharides
|
Oyster digestive tissues
|
Binding
|
|||
Unknown
|
Sialic acid (α2,3)
|
Saccharides
|
Most organs including the central nervous system/heart/liver
|
NeuAc(a2-3)
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01