Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB) June 1, 2016
Species Pathogen Adherence Molecule Ligand Name Ligand Feature Target Source Glycan Sequence ▲ Binding PubMed ID
Unknown
I-active Gal2-lactoisooctaosylceramide
Oligoglycosylceramides
Human colon adenocarcinoma cells (WiDr )
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(a1-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
Not Binding
Unknown
I-active Sialyl lactoisooctaosylceramide
Sialoglycosphingolipids
Human colon adenocarcinoma cells (WiDr )
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
Not Binding
Neutrophil-activating proteins (150-kDa)
I-active Sialyl lactoisooctaosylceramide
Sialoglycosphingolipids
Bovine erythrocytes
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
Not Binding
Unknown
I-active Sialyl lactoisooctaosylceramide
Sialoglycosphingolipids
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
Binding
Unknown
Blood group B antigen
Oligosaccharides
Saliva
Gal(a1-3)[Fuc(a1-2)]Gal
Binding
Unknown
Blood group B antigen
Oligosaccharides
Human saliva
Gal(a1-3)[Fuc(a1-2)]Gal
Not Binding
Unknown
Blood group B antigen
Oligosaccharides
Saliva
Gal(a1-3)[Fuc(a1-2)]Gal
Not Binding
PA-IIL
Blood group B antigen
Oligosaccharides
Gal(a1-3)[Fuc(a1-2)]Gal
Binding
RSL (30-kDa proteins)
Blood group B antigen
Oligosaccharides
Gal(a1-3)[Fuc(a1-2)]Gal
Binding
Capsid proteins
Blood group B antigen
Oligosaccharides
Gal(a1-3)[Fuc(a1-2)]Gal
Binding
Displaying entries 141 - 150 of 1840 in total

International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01