Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▼ | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
20K-fimbriae
|
GlcNAc sequence
|
Saccharides
|
Human colon carcinoma Caco-2 cell line
|
GlcNAc
|
Binding
|
||
|
Type 2-fimbriae
|
β-linked galactosamine
|
Saccharides
|
Plaque
|
GalNAc(b 2:2
|
Binding
|
||
|
18-kDa fimbrial adhesin
|
Galactose derivatives
|
Saccharides
|
HEp-2 cells
|
Gal
|
Binding
|
||
|
F1C
|
unnamed ligand
|
Saccharides
|
Urine
|
GalNAc(b1-4)Gal(b
|
Binding
|
||
|
EfaA (Lary family)
|
L-Fucose-containing residues
|
Saccharides
|
Fuc
|
Binding
|
|||
|
F1C
|
β-GalNac-1,4-β-Gal-containing structures
|
Saccharides
|
GalNAc(b1-4)Gal(b
|
Binding
|
|||
|
Unknown
|
unnamed ligand
|
Saccharides
|
GlcNAc(b1-3)Gal
|
Binding
|
|||
|
CBPs (carbohydrate-binding proteins)
|
High mannose glycans containig the Manα1-2Manα1-6Manα1-6 structure
|
Saccharides
|
Man(a1-2)Man(a1-6)Man(a1-6)
|
Binding
|
|||
|
Unknown
|
Terminal N-Acetylgalactosamine residue in an alpha linkage
|
Saccharides
|
Oyster digestive tissues
|
Binding
|
|||
|
Unknown
|
Sialic acid (α2,3)
|
Saccharides
|
Most organs including the central nervous system/heart/liver
|
NeuAc(a2-3)
|
Binding
|
Displaying entries 141 - 150 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
