GlyCosmos Portal

Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database	Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB)	June 1, 2016

Species ▲	Pathogen Adherence Molecule	Ligand Name	Ligand Feature	Target Source	Glycan Sequence	Binding	PubMed ID
Sendai virus	Unknown	GD1a	Disialoglycosphingolipids		NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer	Binding	12628483
Sendai virus	"HN (hemagglutinin neuraminidase), F (fusion protein)"	Sialic acid	Monosaccharides			Binding	8574698
Sendai virus	Unknown	NeuAc3-nLc6Cer (Sialyl neolactohexaosylceramide)	Sialoglycosphingolipids	Granulocytes	NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer	Binding	8823909
Serratia marcescens	Type 1-fimbriae	Mannose	Monosaccharides		Man	Binding	2885220
Shigella dysenteriae	B subunit	Gb4 (Globoside; Globotetraose; P antigen)	Oligoglycosylceramides	Human erythrocytes	GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Binding	3543013
Shigella dysenteriae	Adhesins	GM1	Monosialoglycosphingolipids		Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer	Binding	11381327
Shigella dysenteriae	Shiga toxin	Gb4 (Globoside; Globotetraose; P antigen)	Oligoglycosylceramides		GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Binding	2435422
Shigella dysenteriae	Unknown	Gb4 (Globoside; Globotetraose; P antigen)	Oligoglycosylceramides		GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Binding	2435422
Shigella dysenteriae	Adhesins	Colonic mucin	Glycoproteins	Colon		Binding	11381327
Shigella dysenteriae	Stx	Platelet-specific GSL (Stx band 0.03)	Glycosphingolipids	Human platelets		Binding	9712788