Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▲ | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Unknown
|
Blood group A antigen
|
Oligosaccharides
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc
|
Binding
|
|||
|
Shiga toxin
|
unnamed ligand
|
Polyglycosylceramides
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Not Binding
|
|||
|
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Binding
|
|||
|
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Not Binding
|
|||
|
Virus Spike Protein VP4 (mapped between aminoacids 93 and 208 of its trypsin cleavage fragment VP8)
|
Sialic acid-containing cell compounds
|
Glycoconjugates
|
Binding
|
||||
|
VP8 (spike protein)
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
|
Unknown
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
|
VP8
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
|
"HN (hemagglutinin neuraminidase), F (fusion protein)"
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
|
HN(hemagglutinin-neuraminidase) glycoproteins
|
Sialic acid
|
Monosaccharides
|
Binding
|
Displaying entries 1551 - 1560 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
