PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species ▼ | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
CBPs (choline-binding proteins)
|
Sialic acid
|
Monosaccharides
|
Cytokine-activated cells
|
Binding
|
|||
CbpA; SpsA; PbcA; PspC (CBPs)
|
Sialic acid
|
Monosaccharides
|
Cytokine activated epithelial and endothelial cells
|
Binding
|
|||
PspC (Lary family) (alias: SpsA/CbpA/PbcA/Hic)
|
C3 and complement factor H
|
Glycoproteins
|
Binding
|
||||
Adhesins
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Chinchilla tracheal epithelium
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
PsaA (Lary family)
|
unknown carbohydrate ligand
|
Saccharides
|
Nasopharynx, Alveolar epithelial cells
|
Binding
|
|||
PclA (pneumococcal collagen-like protein A)
|
unknown carbohydrate ligand
|
Saccharides
|
Detroit 562/A549 cell lines
|
Binding
|
|||
SpsA
|
IgA
|
Glycoproteins
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01