PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule ▼ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Capsid proteins
|
Blood group H1 antigen
|
Oligosaccharides
|
Fuc(a1-2)Gal(b1-3)GlcNAc
|
Binding
|
|||
Capsid protein VP1
|
Sialylated oligosaccharides
|
Oligosaccharides
|
Cell surface
|
NeuAc(a2-3)Gal(b1-3)GalNAc
|
Binding
|
||
Capsid protein VP1
|
Sialylated oligosaccharides
|
Oligosaccharides
|
Cell surface
|
NeuAc(a2-3)Gal(b1-3)[NeuAc(a2-6)]GalNAc
|
Binding
|
||
Capsid VP1
|
GD1a-GT1b analog
|
Sialoglycosphingolipids
|
(broad range)
|
Binding
|
|||
Ca2+-independent lectins
|
Hs antigen
|
Glycoproteins
|
NeuAc(a2-3)Gal(b1-4)Glc-HSA
|
Binding
|
|||
Ca2+-independent lectins
|
Fetuin
|
Glycoproteins
|
Binding
|
||||
Ca2+-independent lectins
|
Hs antigen
|
Glycoproteins
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc-HSA
|
Binding
|
|||
CTB-PsaA pentamers
|
GM1
|
Monosialoglycosphingolipids
|
Serum, Saliva, Nasal/bronchial wash samples
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
CS3 (coli surface 3)-fimbriae
|
GM1
|
Monosialoglycosphingolipids
|
Intestinal epithelium, Rabbit intestine
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
CS3 (coli surface 3)-fimbriae
|
GM2(NeuAc)
|
Monosialoglycosphingolipids
|
Intestinal epithelium, Rabbit intestine
|
GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01