PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name ▼ | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
Blood group A antigen
|
Oligosaccharides
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc
|
Binding
|
|||
Unknown
|
Bis-sulfogangliotriaosylceramide (SB2)
|
Sulfoglycosphingolipids
|
HSO3(-3)GalNAc(b1-4)[HSO3(-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
17-kDa HBP (Heparin-binding protein)
|
Basic fibroblast growth factor (bFGF)
|
Glycoproteins
|
Binding
|
||||
17-kDa HBP (Heparin-binding protein)
|
Basic fibroblast growth factor (bFGF)
|
Glycoproteins
|
Binding
|
||||
Unknown
|
B6 type 2 glycosphingolipid (B6-2)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
B subunit
|
B6 type 2 glycosphingolipid (B6-2)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Cholera toxin
|
B-GM1
|
Monosialoglycosphingolipids
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
B-GM1
|
Monosialoglycosphingolipids
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Adhesins
|
Asialofetuin
|
Glycoproteins
|
HL-60 promyelocytic leukemia cell line
|
Binding
|
|||
Lectin-like proteins (adhesin)
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Sputa of cystic fibrosis patients
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01