PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▲ | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
hLT
|
Blood group A antigen analog
|
Oligosaccharides
|
Binding
|
||||
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
B subunit
|
unnamed ligand
|
Polyglycosylceramides
|
Rat small intestine
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Not Binding
|
||
Shiga toxin
|
unnamed ligand
|
Polyglycosylceramides
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Not Binding
|
|||
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Binding
|
|||
Unknown
|
unnamed ligand
|
Polyglycosylceramides
|
GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5
|
Not Binding
|
|||
OpcA
|
Sialic acid-containing polysaccharides
|
Polysaccharides
|
Epithelial cells
|
Binding
|
|||
FHA (442-863)
|
Dextran sulfate
|
Polysaccharides
|
WiDr cells, HeLa cells, Vero cells, Extracellular matrix (ECM)
|
Binding
|
|||
Unknown
|
Pentosan polysulfate (PP)
|
Polysaccharides
|
Human T cells
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01