PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▲ |
---|---|---|---|---|---|---|---|
Type 4-pili
|
Thyroglobulin containing N-linked complex and hybrid (oligomannosidic) glycans
|
Glycoproteins
|
Bovine
|
Binding
|
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Type 4-pili
|
Agglutinin glycoproteins containing O-/N-linked (poly)lactosamine and hybrid oligosaccharides
|
Glycoproteins
|
Human saliva
|
Binding
|
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SspA/SspB (AgI/II family)
|
Collagen (type I)
|
Glycoproteins
|
humHn oral cavity (root dentine)
|
Binding
|
|||
SspA/SspB (AgI/II family)
|
Salivary glycoprotein (gp340)
|
Glycoproteins
|
Human oral cavity (in fluid and surface-associated phases)
|
Binding
|
|||
Hsa
|
Salivary glycoprotein (gp340)
|
Glycoproteins
|
Human oral cavity (surface-bound)
|
Binding
|
|||
Hsa
|
Sialic acid
|
Monosaccharides
|
Human oral cavity (erythrocytes and polymorphonuclear leukocytes)
|
Binding
|
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SspA/SspB (AgI/II family)
|
unknown carbohydrate ligand
|
Saccharides
|
Platelet
|
Binding
|
|||
Hsa
|
unknown carbohydrate ligand
|
Saccharides
|
Platelet
|
Binding
|
|||
"OspA, OspB, OspC"
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Gal(b1-1)Cer
|
Binding
|
|||
"DbpA, DbpB, Bgp"
|
Dermatan sulfate
|
Glycosaminoglycans
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01