PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▼ | PubMed ID |
---|---|---|---|---|---|---|---|
Type 2-fimbriae
|
β-linked galactosamine
|
Saccharides
|
Buccae
|
GalNAc(b 2:1
|
Binding
|
||
Unknown
|
Glycoprotein with α2,6 N-linked sialic acid
|
Glycoproteins
|
NeuAc(a2-6)Gal(b1-4)GlcNAc
|
Binding
|
|||
Unknown
|
SSEA-4 (GSL) (Sialosyl galactosyl globoside; SGG; sialyl Gb5)
|
Monosialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sialyl Lewis a (SLea) (GSL)
|
Monosialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
SabA (sialic acid-binding adhesin)
|
Sialyl-dimeric Lewis x (SdiLex) (GSL)
|
Monosialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
SSEA-4 (GSL) (Sialosyl galactosyl globoside; SGG; sialyl Gb5)
|
Monosialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
MuV-HN
|
Glycans containing α2,3-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-2)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-4]Man(a1-3)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
|
Binding
|
|||
MuV-HN
|
Glycans containing α2,3-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-3)Gal(b1-4)GlcNAc
|
Binding
|
|||
Hemagglutinin (HA)
|
NeuAc3-nLc6Cer (Sialyl neolactohexaosylceramide)
|
Sialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
NeuAc3-nLc6Cer (Sialyl neolactohexaosylceramide)
|
Sialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01