PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species ▲ | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Adhesins
|
N-Acetylgalactosamine
|
Monosaccharides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc
|
Binding
|
||
Adhesins
|
D-Mannose
|
Monosaccharides
|
Type-II lung cells, Vascular endothelial cells
|
Man
|
Binding
|
||
Adhesins
|
D-Galactose
|
Monosaccharides
|
Vascular endothelial cells (only)
|
Gal
|
Binding
|
||
Adhesins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
CBPs (choline-binding proteins)
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Cytokine-activated cells
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Chinchilla tracheal epithelium
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
CbpA; SpsA; PbcA; PspC (CBPs)
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Cytokine activated epithelial and endothelial cells
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
unnamed ligand
|
Oligosaccharides
|
Chinchilla tubotympanum
|
Gal(b1-4)GlcNAc(b1-3)Gal(b
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01