Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▲ | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Yeast cells and hyphae
|
Laminin
|
Glycoproteins
|
Extracellular matrix (ECM)
|
Binding
|
|||
|
VP1 (RGD peptide)
|
Heparin
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Not Binding
|
|||
|
Natural ligand of integrin [alpha]v[beta]3
|
De-N-sulfated heparin
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Not Binding
|
|||
|
Natural ligand of integrin [alpha]v[beta]3
|
Dextran sulfate
|
Polysaccharides
|
Extracellular matrix (ECM)
|
Not Binding
|
|||
|
DbpA
|
Decorin
|
Proteoglycans
|
Extracellular matrix (ECM)
|
Binding
|
|||
|
Viral protein
|
NeuAc/GlcNAc/(GlcNAc)n side chains of WGA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
NeuAc/GlcNAc/(GlcNAc)n
|
Binding
|
||
|
Viral protein
|
NeuAcα2,3-Gal/GalNAc side chains of MAA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
NeuAc(a2-3)Gal/GalNAc
|
Binding
|
||
|
Viral protein
|
α-mannose and α-glucose side chains of ConA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
Man/Glc
|
Binding
|
||
|
Unknown
|
Mannose 6-phosphate insulin-like growth factor-II receptor (M6P/IGF-IIR)
|
Glycoproteins
|
Fetal calf serum
|
Binding
|
|||
|
Unknown
|
Mannose 6-phosphate insulin-like growth factor-II receptor (M6P/IGF-IIR)
|
Glycoproteins
|
Fetal calf serum
|
Binding
|
Displaying entries 161 - 170 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
