PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▼ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Raft-like plasma membrane domains
|
β-2 and β-7 integrins
|
Glycoproteins
|
Intestinal cells
|
Binding
|
|||
VP1 (RGD peptide)
|
Heparin
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Not Binding
|
|||
Natural ligand of integrin [alpha]v[beta]3
|
De-N-sulfated heparin
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Not Binding
|
|||
Unknown
|
NAC-heparin (non-anticoagulant heparin)
|
Glycosaminoglycans
|
Human T cells
|
Binding
|
|||
Unknown
|
NAC-heparin (non-anticoagulant heparin)
|
Glycosaminoglycans
|
HeLa cells
|
Binding
|
|||
Unknown
|
NAC-heparin (non-anticoagulant heparin)
|
Glycosaminoglycans
|
Human cervical cells
|
Binding
|
|||
Unknown
|
NAC-heparin (non-anticoagulant heparin)
|
Glycosaminoglycans
|
Human epithelial cells
|
Binding
|
|||
Adhesins
|
PGCs (polyglycosyl ceramides)
|
Glycosphingolipids
|
Human leukocytes, Human neutrophils
|
Binding
|
|||
Unknown
|
PGCs (polyglycosyl ceramides)
|
Glycosphingolipids
|
Human erythrocytes, Human leukocytes, Human placenta
|
Binding
|
|||
Unknown
|
PGCs (polyglycosyl ceramides)
|
Glycosphingolipids
|
Rat small intestine, Wild boar intestine, Monkey intestine
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01