PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▼ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Adhesins
|
Lipid extracts of Hep-2 cells
|
Non-glycosylated Lipids
|
HEp-2 cells
|
Binding
|
|||
P-pili
|
Surfactant-like particles (SLP)
|
Non-glycosylated Lipids
|
Human colonocytes and enterocytes
|
Binding
|
|||
PapD-PapG (class I)
|
Surfactant-like particles (SLP)
|
Non-glycosylated Lipids
|
Human colonocytes and enterocytes
|
Binding
|
|||
Natural ligand of integrin [alpha]v[beta]3
|
Dextran sulfate
|
Polysaccharides
|
Extracellular matrix (ECM)
|
Not Binding
|
|||
Virus Spike Protein VP4 (mapped between aminoacids 93 and 208 of its trypsin cleavage fragment VP8)
|
Sialic acid-containing cell compounds
|
Glycoconjugates
|
Binding
|
||||
VP8 (spike protein)
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
Unknown
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
VP8
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
"HN (hemagglutinin neuraminidase), F (fusion protein)"
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
HN(hemagglutinin-neuraminidase) glycoproteins
|
Sialic acid
|
Monosaccharides
|
Binding
|
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Partly supported by NIH Common Fund Grant #1U01GM125267-01