PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▲ |
---|---|---|---|---|---|---|---|
RS-IIL (homologous to PA-IIL)
|
Fucose
|
Monosaccharides
|
Fuc
|
Binding
|
|||
PA-IIL
|
Blood group Lewis b (Leb) antigen
|
Oligosaccharides
|
Binding
|
||||
PA-IIL
|
Lewis a (Lea) (GSL)
|
Glycosphingolipids
|
Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
PA-IIL
|
Blood group B antigen
|
Oligosaccharides
|
Gal(a1-3)[Fuc(a1-2)]Gal
|
Binding
|
|||
PA-IIL
|
Blood group A antigen
|
Oligosaccharides
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc
|
Binding
|
|||
RSL (30-kDa proteins)
|
Blood group B antigen
|
Oligosaccharides
|
Gal(a1-3)[Fuc(a1-2)]Gal
|
Binding
|
|||
RSL (30-kDa proteins)
|
Blood group A antigen
|
Oligosaccharides
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc
|
Binding
|
|||
Unknown
|
Glycoproteins with α2,3 N-linked sialic acid
|
Glycoproteins
|
NeuAc(a2-3)Gal(b1-4)GlcNAc
|
Binding
|
|||
Unknown
|
NeuAcα2-3GalNAcβ1-4GlcNAc
|
Oligosaccharides
|
NeuAc(a2-3)GalNAc(b1-4)GlcNAc
|
Binding
|
|||
Unknown
|
Glycoprotein with α2,6 N-linked sialic acid
|
Glycoproteins
|
NeuAc(a2-6)Gal(b1-4)GlcNAc
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01