Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▲ | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
TLP (Triple-layered virus particles)
|
Gangliosides
|
Sialoglycosphingolipids
|
Binding
|
||||
|
"OspA, OspB, OspC"
|
Gangliosides
|
Sialoglycosphingolipids
|
Binding
|
||||
|
Unknown
|
Neuraminic acid-containing sialoglycosphingolipids
|
Sialoglycosphingolipids
|
Binding
|
||||
|
Neutrophil-activating proteins (150-kDa)
|
NeuGc3-Lc4Cer (Sialyl lactotetraosylceramide)
|
Sialoglycosphingolipids
|
Rabbit thymus
|
NeuGc(a2-3)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
NeuGc3-nLc6Cer
|
Sialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuGc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Neutrophil-activating proteins (150-kDa)
|
unnamed ligand
|
Sialoglycosphingolipids
|
Human erythrocytes
|
Fuc(a1-2)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
NeuAc6-Lc4Cer (Sialyl lactotetraosylceramide)
|
Sialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
NeuGc3-nLc6Cer
|
Sialoglycosphingolipids
|
NeuGc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
NeuAc3-nLc6Cer (Sialyl neolactohexaosylceramide)
|
Sialoglycosphingolipids
|
Granulocytes
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
unnamed ligand
|
Sialoglycosphingolipids
|
Frog brain
|
Gal(b1-3)[NeuAc(a2-6)]GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
Displaying entries 1731 - 1740 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
