PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species ▼ | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
unknown carbohydrate ligand
|
Saccharides
|
Tongue
|
Binding
|
|||
Unknown
|
GD1b
|
Disialoglycosphingolipids
|
Human brain
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
GM1
|
Monosialoglycosphingolipids
|
Human brain
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Type-2 fimbrial lectins (130-kDa glycoprotein)
|
N-Acetylgalactosamine
|
Monosaccharides
|
Polymorphonuclear leukocytes (PMNs)
|
GalNAc
|
Binding
|
||
Type-2 fimbrial lectins (130-kDa glycoprotein)
|
Galactose
|
Monosaccharides
|
Polymorphonuclear leukocytes (PMNs)
|
Gal
|
Binding
|
||
Adhesins
|
N-Acetylgalactosamine
|
Monosaccharides
|
HL-60 promyelocytic leukemia cell line, Leukosialin (CD43)
|
GalNAc
|
Binding
|
||
Adhesins
|
Galactose
|
Monosaccharides
|
HL-60 promyelocytic leukemia cell line, Leukosialin (CD43)
|
Gal
|
Binding
|
||
Unknown
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Dog small intestine
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Human brain
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Dog small intestine
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01