Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▲ | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
S-fimbriae (SfaA)
|
Galactosyl sulfatide
|
Sulfoglycosphingolipids
|
Brain endothelial cells
|
Gal(3SO4)(b1-1)Cer
|
Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Piglet intestine
|
HSO3(-3)Gal(b1-1)Cer
|
Not Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
Sulfo-lactosylceramide (SM3)
|
Sulfoglycosphingolipids
|
Piglet intestine
|
HSO3(-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
Sulfo-gangliotetraosylceramide (Sulfo-GgO4)
|
Sulfoglycosphingolipids
|
Mouse small intestine
|
HSO3(-3)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
F1C
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Porcine intestine
|
HSO3(-3)Gal(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
Galactosylceramide 6-sulfate
|
Sulfoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(6SO4)(b1-1)Cer
|
Binding
|
||
|
Unknown
|
Galactosyl sulfatide
|
Sulfoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(3SO4)(b1-1)Cer
|
Binding
|
||
|
Unknown
|
Sulfated glucuronyl paragloboside
|
Sulfoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
GlcA(3SO4)(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Human meconium
|
HSO3(-3)Gal(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
Sulfo-gangliotetraosylceramide (Sulfo-GgO4)
|
Sulfoglycosphingolipids
|
Mouse small intestine
|
HSO3(-3)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
Displaying entries 1771 - 1780 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
