Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▲ | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Neutrophil-activating proteins (150-kDa)
|
Sulfo-gangliotetraosylceramide (Sulfo-GgO4)
|
Sulfoglycosphingolipids
|
Mouse intestine
|
HSO3(-3)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
F1C
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
SB1a (gangliotetraosylceramide bis-sulfate; SD1a)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-3)GalNAc(b1-4)[HSO3(-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
Gangliotriaosylceramide sulfate (SM2)
|
Sulfoglycosphingolipids
|
GalNAc(b1-4)[HSO3(-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
SGPG (Sulfated glucuronyl paragloboside)
|
Sulfoglycosphingolipids
|
HSO3(-3)GlcA(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
Bis-sulfogangliotriaosylceramide (SB2)
|
Sulfoglycosphingolipids
|
HSO3(-3)GalNAc(b1-4)[HSO3(-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
Galactosyl sulfatide
|
Sulfoglycosphingolipids
|
Gal(3SO4)(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
SGLPG (Sulfated glucuronyl lactosaminyl paragloboside)
|
Sulfoglycosphingolipids
|
HSO3(-3)GlcA(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
GQ1b
|
Tetrasialoglycosphingolipids
|
Intestinal tract
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
PsaA/B (pH-6 antigen)
|
GQ1b
|
Tetrasialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
Displaying entries 1781 - 1790 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
