PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▼ |
---|---|---|---|---|---|---|---|
18-kDa proteins
|
unnamed ligand
|
Oligosaccharides
|
Mucos membranes of the genitourinary tract/rectum/oropharynx/conjunctiva
|
Gal(b1-4)GlcNAc(b1-4)Gal(b1-4)Glc
|
Binding
|
||
Adhesins
|
Lactotriaosylceramide (Lc3)
|
Oligoglycosylceramides
|
GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
36-kDa proteins
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Mucos membranes of the genitourinary tract/rectum/oropharynx/conjunctiva
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
GM3(NeuAc)
|
Monosialoglycosphingolipids
|
Human gastric mucosa
|
NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Human gastric mucosa
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
||
Adhesins
|
terminal Gal(3SO4) β1- residues
|
Sulfoglycosphingolipids
|
Human lung, Human trachea
|
Gal(3SO4)(b
|
Binding
|
||
Adhesins
|
terminal Gal(3SO4) β1- residues
|
Sulfoglycosphingolipids
|
Gal(3SO4)(b
|
Binding
|
|||
Adhesins
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Human lung, Human trachea
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Lectin-like proteins (adhesin)
|
unnamed ligand
|
Oligosaccharides
|
Gal(b1-4)GlcNAc
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01