Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▼ |
|---|---|---|---|---|---|---|---|
|
"DbpA, DbpB, Bgp"
|
Heparin
|
Glycosaminoglycans
|
Binding
|
||||
|
"OspA, OspB, OspC"
|
Gangliosides
|
Sialoglycosphingolipids
|
Binding
|
||||
|
"P-selectin mimic, MSP2"
|
Fucosylated PSGL-1 (P-selectin glycoprotein ligand-1)
|
Glycoproteins
|
Binding
|
||||
|
"OspA, OspB, OspC"
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
"DbpA, DbpB, Bgp"
|
Decorin
|
Proteoglycans
|
Binding
|
||||
|
"MSP1a, MSP1b, MSP2"
|
unknown carbohydrate ligand
|
Saccharides
|
Binding
|
||||
|
SspA/SspB (AgI/II family)
|
Collagen (type I)
|
Glycoproteins
|
humHn oral cavity (root dentine)
|
Binding
|
|||
|
SspA/SspB (AgI/II family)
|
Salivary glycoprotein (gp340)
|
Glycoproteins
|
Human oral cavity (in fluid and surface-associated phases)
|
Binding
|
|||
|
Hsa
|
Salivary glycoprotein (gp340)
|
Glycoproteins
|
Human oral cavity (surface-bound)
|
Binding
|
|||
|
Hsa
|
Sialic acid
|
Monosaccharides
|
Human oral cavity (erythrocytes and polymorphonuclear leukocytes)
|
Binding
|
Displaying entries 171 - 180 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
