Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species ▼ | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Type-2 fimbrial lectins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
unnamed ligand
|
Oligosaccharides
|
Gal(b1-3)GalNAc
|
Binding
|
|||
|
Adhesins
|
PMN (polymorphonuclear leukocytes) surface glycoproteins
|
Glycoproteins
|
Human peripheral blood buffy coat cells
|
Binding
|
|||
|
Adhesins
|
Asialofetuin
|
Glycoproteins
|
HL-60 promyelocytic leukemia cell line
|
Binding
|
|||
|
Unknown
|
GD1a
|
Disialoglycosphingolipids
|
Human brain
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
GM3(NeuAc)
|
Monosialoglycosphingolipids
|
Human erythrocytes
|
NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
Sialyl-3-Paragloboside (S-3-PG; α2,3-sialylparagloboside)
|
Monosialoglycosphingolipids
|
Human erythrocytes
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
unnamed ligand
|
Sialoglycosphingolipids
|
Frog brain
|
NeuAc(a2-3)Gal(b1-3)[NeuAc(a2-6)]GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Human meconium
|
Gal(a1-4)Gal(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
unnamed ligand
|
Glycosphingolipids
|
Human meconium
|
Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
Displaying entries 1791 - 1800 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
