PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
Heparin (completely desulfated, N-acetylated)
|
Glycosaminoglycans
|
Vero cells
|
Not Binding
|
|||
Unknown
|
unknown carbohydrate ligand
|
Saccharides
|
Tongue
|
Binding
|
|||
Unknown
|
Endothelial cell-specific molecule (ESM)
|
Proteoglycans
|
Not Binding
|
||||
VP1 (RGD peptide)
|
αvβ3 Integrin (independent of expression of Heparan sulfate on cell-sulface)
|
Glycoproteins
|
Extracellular matrix (ECM)
|
Binding
|
|||
VP1 (RGD peptide)
|
Heparin
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Binding
|
|||
VP1 (RGD peptide)
|
Heparan sulfate (independent of expression of αvβ3 Integrin on cell-sulface)
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Binding
|
|||
VP1 (RGD peptide)
|
Heparan sulfate (independent of expression of αvβ3 Integrin on cell-sulface)
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Binding
|
|||
VP1 (RGD peptide)
|
Heparan sulfate (independent of expression of αvβ3 Integrin on cell-sulface)
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Binding
|
|||
VP1 (RGD peptide)
|
Heparan sulfate (independent of expression of αvβ3 Integrin on cell-sulface)
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Binding
|
|||
VP1 (RGD peptide)
|
Heparin
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Not Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01