Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
VP1 protein (RGD motif)
|
αvβ3 Integrin
|
Glycoproteins
|
BHK-21/LLC-MK2/HeLa/BK-LF
|
Binding
|
|||
|
VP2 amino acids on puff B
|
Sialic acid (α2,3)
|
Saccharides
|
Central nervous system
|
NeuAc(a2-3)
|
Binding
|
||
|
VP8
|
Sialic acid
|
Monosaccharides
|
Epithelial cells of small intestine
|
Binding
|
|||
|
VP8
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
|
VP8 (galectin)
|
Sialic acid(2-O-methyl-α-Neu5Ac (Neu5Ac2Me))
|
Monosaccharides
|
Binding
|
||||
|
VP8 (spike protein)
|
Sialic acid(2-O-methyl-α-Neu5Gc (Neu5Gc2Me))
|
Monosaccharides
|
Binding
|
||||
|
VP8 (spike protein)
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
|
Verotoxin
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Verotoxin
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Verotoxin (1)
|
unnamed ligand
|
Oligosaccharides
|
Gal(a1-4)Gal(b1-4)Glc(b
|
Binding
|
Displaying entries 1811 - 1820 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
