Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Verotoxin (1/2c)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Verotoxin (1; B-subunit)
|
CD77 (Globotriaosylceramide; Gb3)
|
Oligoglycosylceramides
|
Germinal center B lymphocytes, Burkitt's lymphoma cells
|
Gal(a1-4)Gal
|
Binding
|
||
|
Verotoxin (2)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Viral protein
|
NeuAc/GlcNAc/(GlcNAc)n side chains of WGA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
NeuAc/GlcNAc/(GlcNAc)n
|
Binding
|
||
|
Viral protein
|
NeuAcα2,3-Gal/GalNAc side chains of MAA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
NeuAc(a2-3)Gal/GalNAc
|
Binding
|
||
|
Viral protein
|
α-mannose and α-glucose side chains of ConA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
Man/Glc
|
Binding
|
||
|
Virus Spike Protein VP4 (mapped between aminoacids 93 and 208 of its trypsin cleavage fragment VP8)
|
Sialic acid-containing cell compounds
|
Glycoconjugates
|
Binding
|
||||
|
Yeast cells and conidia
|
Fibronectin
|
Glycoproteins
|
Extracellular matrix (ECM)
|
Binding
|
|||
|
Yeast cells and hyphae
|
Fibronectin
|
Glycoproteins
|
Extracellular matrix (ECM)
|
Binding
|
|||
|
Yeast cells and hyphae
|
Laminin
|
Glycoproteins
|
Extracellular matrix (ECM)
|
Binding
|
Displaying entries 1821 - 1830 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
