PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule ▼ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
"OspA, OspB, OspC"
|
Gangliosides
|
Sialoglycosphingolipids
|
Binding
|
||||
"OspA, OspB, OspC"
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
"MSP1a, MSP1b, MSP2"
|
unknown carbohydrate ligand
|
Saccharides
|
Binding
|
||||
"HN (hemagglutinin neuraminidase), F (fusion protein)"
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
"Extracellular polymeric material, acid proteinase, chitin"
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Human buccal epihelial cells (BECs)
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
"Extracellular polymeric material, acid proteinase, chitin"
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Human buccal epihelial cells (BECs)
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
"DbpA, DbpB, Bgp"
|
Dermatan sulfate
|
Glycosaminoglycans
|
Binding
|
||||
"DbpA, DbpB, Bgp"
|
Collagen (type I)
|
Glycoproteins
|
Binding
|
||||
"DbpA, DbpB, Bgp"
|
Heparin
|
Glycosaminoglycans
|
Binding
|
||||
"DbpA, DbpB, Bgp"
|
Decorin
|
Proteoglycans
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01