Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
B subunit
|
SSEA-3 (GSL) (Galactosyl globoside; Gb5)
|
Oligoglycosylceramides
|
Human kidney
|
Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
B subunit
|
unnamed ligand
|
Oligoglycosylceramides
|
Rat small intestine
|
[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=2-5
|
Not Binding
|
||
|
BBK32
|
Dermatan sulfate
|
Glycosaminoglycans
|
Mammalian cell surface
|
Binding
|
|||
|
BBK32
|
Heparin
|
Glycosaminoglycans
|
Mammalian cell surface
|
Binding
|
|||
|
BBK32
|
GAGs (glycosaminoglycans)
|
Glycosaminoglycans
|
Binding
|
||||
|
BBK32
|
Fibronectin
|
Glycoproteins
|
Binding
|
||||
|
BabA (blood group antigen binding adhesin)
|
Fucosylated Lewis b (Leb) histoblood group antigens
|
Oligosaccharides
|
Human gastric epithelium
|
Binding
|
|||
|
BabA (blood group antigen binding adhesin)
|
Blood group Lewis b (Leb) antigen
|
Oligosaccharides
|
Binding
|
||||
|
BabA (blood group antigen binding adhesin)
|
Blood group Lewis b (Leb) antigen
|
Oligosaccharides
|
Binding
|
||||
|
BabA (blood group antigen binding adhesin)
|
Blood group H1 antigen (HSA)
|
Glycoproteins
|
Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
Displaying entries 181 - 190 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
