Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▼ | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
K99
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
Pig small intestine
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
N-linked sialylated glycoproteins
|
Glycoproteins
|
Pig neurons, glial cells
|
Binding
|
|||
|
Adhesins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Pharyngeal epithelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Adhesins
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Pharyngeal epithelial cells
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Adhesins
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Phagocytes
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Type 1-fimbriae
|
trisaccharide: Man(a1-3)Man(b1-4)GlcNAc
|
Oligosaccharides
|
Patient with urinary tract infection
|
Man(a1-3)Man(b1-4)GlcNAc
|
Binding
|
||
|
Type 1-fimbriae
|
β-D-glycosides
|
Glycoconjugates
|
Patient with urinary tract infection
|
Binding
|
|||
|
Type 1-fimbriae
|
Glycoside p-nitrophenyl alpha-D-mannopyranoside
|
Glycoconjugates
|
Patient with urinary tract infection
|
Binding
|
|||
|
Type 1-fimbriae
|
Synthetic branched oligosaccharides: Man(a1-3)[Man(a1-6)]Man(a1-6)Man(a1-3)Man
|
Oligosaccharides
|
Patient with urinary tract infection
|
Man(a1-3)[Man(a1-6)]Man(a1-6)[Man(a1-3)]Man
|
Binding
|
||
|
Type 1-fimbriae
|
Synthetic branched oligosaccharides: Man(a1-3)[Man(a1-6)]Man(a1-6)[Man(a1-2)]Man(a1-3)Man
|
Oligosaccharides
|
Patient with urinary tract infection
|
Man(a1-3)[Man(a1-6)]Man(a1-6)[Man(a1-2)Man(a1-3)]Man
|
Binding
|
Displaying entries 181 - 190 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
