PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▲ | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
Lactosylceramide (t18:0-h16:0-h24:0)
|
Diosylceramides
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Lectin-like proteins (adhesin)
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Sputa of cystic fibrosis patients
|
Gal(a1-4)Gal(b1-1)Cer
|
Binding
|
||
P-fimbriae
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Urine
|
Gal(a1-4)Gal(b1-1)Cer
|
Binding
|
||
P-pili
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Epithelial cells in human urinary tract
|
Gal(a1-4)Gal(b1-1)Cer
|
Binding
|
||
35S-labeled or 125I-labeled proteins
|
Lactosylceramide (d18:1-16:0/24:1)
|
Diosylceramides
|
Human granulocytes, Human erythrocytes
|
Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
Lactosylceramide (d18:1-h16:0/t18:0-h24:0/t18:0-h16:0)
|
Diosylceramides
|
Dog small intestine
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
F1C
|
Lactosylceramide (d18:1-16:0/24:1)
|
Diosylceramides
|
Human neutrophils
|
Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Synthetic
|
Gal(a1-4)Gal(b1-1)Cer
|
Not Binding
|
||
Lectin-like proteins (adhesin)
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Gonorrhoeae patients
|
Gal(a1-4)Gal(b1-1)Cer
|
Not Binding
|
||
PapG (class II)
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Epithelial cells in human urinary tract
|
Gal(a1-4)Gal(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01