PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▲ | PubMed ID |
---|---|---|---|---|---|---|---|
Fibrillar hemmagglutinin
|
N-acetylneuraminyl-a(2-3)-galactopyranosyl sequence
|
Glycoproteins
|
Gastric epithelium, Mucus layer of the stomach
|
NeuAc(a2-3)Gal
|
Binding
|
||
SV40
|
GM1
|
Monosialoglycosphingolipids
|
(broad range)
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Sialyl-3-Paragloboside (S-3-PG; α2,3-sialylparagloboside)
|
Monosialoglycosphingolipids
|
Human leukocytes, Human neutrophils
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
K99
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
Pig small intestine
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
CS3 (coli surface 3)-fimbriae
|
GM1
|
Monosialoglycosphingolipids
|
Intestinal epithelium, Rabbit intestine
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
CS3 (coli surface 3)-fimbriae
|
GM2(NeuAc)
|
Monosialoglycosphingolipids
|
Intestinal epithelium, Rabbit intestine
|
GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Fimbriae
|
GM2(NeuAc)
|
Monosialoglycosphingolipids
|
Human pharyngeal epithelial cells
|
GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
GM3(NeuAc)
|
Monosialoglycosphingolipids
|
Granulocytes
|
NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
Sialyl-3-Paragloboside (S-3-PG; α2,3-sialylparagloboside)
|
Monosialoglycosphingolipids
|
Granulocytes
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
GM3(NeuAc)
|
Monosialoglycosphingolipids
|
Human gastric mucosa
|
NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01