PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
"OspA, OspB, OspC"
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
"P-selectin mimic, MSP2"
|
Fucosylated PSGL-1 (P-selectin glycoprotein ligand-1)
|
Glycoproteins
|
Binding
|
||||
(class I)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
(class I/II)
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
(class I/II)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
(class I/II)
|
GL-IV glycolipid
|
Glycolipids
|
Binding
|
||||
(class I/II)
|
GL-III glycolipid
|
Glycolipids
|
Binding
|
||||
(class I/II/III)
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
(class I/II/III)
|
Globo-A
|
Oligoglycosylceramides
|
Binding
|
||||
(class I/III)
|
GL-IV glycolipid
|
Glycolipids
|
Not Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01