PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
BabA (blood group antigen binding adhesin)
|
Blood group B-Lewis b (BLeb) antigen
|
Oligosaccharides
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-3)[Fuc(a1-4)]GlcNAc
|
Binding
|
|||
BabA (blood group antigen binding adhesin)
|
Blood group A-Lewis b (ALeb) antigen
|
Oligosaccharides
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)[Fuc(a1-4)]GlcNAc
|
Binding
|
|||
BabA (blood group antigen binding adhesin)
|
Blood group A antigen
|
Oligosaccharides
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc
|
Binding
|
|||
BoNT/B
|
GT1b (complex with synaptotagmin II)
|
Trisialoglycosphingolipids
|
Presynaptic membrane of neuromuscular junction
|
Binding
|
|||
BoNT/C (located within amino acid residues 1122-1290)
|
GD1b
|
Disialoglycosphingolipids
|
Presynaptic neuronal cells
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
BoNT/C (located within amino acid residues 1122-1290)
|
GT1b
|
Trisialoglycosphingolipids
|
Presynaptic neuronal cells
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
BoNT/D (two lysine residues (K1117 and K1135 in Hc/D1))
|
Phosphatidylethanolamine (PE)
|
Non-glycosylated Lipids
|
Presynaptic neuronal cells
|
Binding
|
|||
Botulinum neurotoxin
|
GT1b
|
Trisialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Botulinum neurotoxin
|
GT1b (complex with synaptotagmin II)
|
Trisialoglycosphingolipids
|
Presynaptic membrane of neuromuscular junction
|
Binding
|
|||
Botulinum neurotoxin (16S)
|
Lactose
|
Disaccharides
|
Intestinal epithelial cells (T84)
|
Gal(b1-4)Glc
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01