PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▲ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
F1C
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH) (d18:1-16:0/24:0)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
PrsG (class III)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
PapG (class I)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Lectin-like proteins (adhesin)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Sputa of cystic fibrosis patients
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Adhesins
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Erythrocytes
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
P-fimbriae
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
P-fimbriae
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Type 4-pili
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Epithelial cells
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Shiga-like toxin (Stx1)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
GI/kidney
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Shiga toxin (Stx2)
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Vero cells
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01