Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name ▼ | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Unknown
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Adhesins
|
hCG (human chorionic gonadotropin)
|
Glycoproteins
|
Erythrocytes
|
Binding
|
|||
|
33-kDa proteins
|
factor H (fH)
|
Glycoproteins
|
Binding
|
||||
|
S-fimbriae
|
alpha-sialyl-beta-2,3-galactose-containing glycolipids and glycoproteins
|
Glycoconjugates
|
NeuAc(a2-3)Gal(b
|
Binding
|
|||
|
LecB
|
alpha-methyl-fucoside
|
Monosaccharides
|
A549 cells
|
Binding
|
|||
|
Type 1-fimbriae
|
alpha-Mannosyl groups on glycoproteins
|
Glycoproteins
|
Binding
|
||||
|
PapG
|
alpha-D-galactopyranosyl-(1-4)-beta-D-galactopyranose
|
Disaccharides
|
Uroepithelial cells
|
Gal(a1-4)Gal
|
Binding
|
||
|
FimD
|
VLA-5 (very late activation antigen 5)
|
Glycoproteins
|
Monocytes
|
Binding
|
Displaying entries 221 - 230 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
