Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▲ | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
(class I/III)
|
GL-IV glycolipid
|
Glycolipids
|
Not Binding
|
||||
|
P-fimbriae
|
GL-II glycolipid
|
Glycolipids
|
Binding
|
||||
|
(class I/II)
|
GL-III glycolipid
|
Glycolipids
|
Binding
|
||||
|
P-fimbriae
|
GL-III glycolipid
|
Glycolipids
|
Binding
|
||||
|
(class III)
|
GL-III glycolipid
|
Glycolipids
|
Not Binding
|
||||
|
(class I/III)
|
GL-II glycolipid
|
Glycolipids
|
Not Binding
|
||||
|
P-fimbriae
|
GL-III glycolipid
|
Glycolipids
|
Not Binding
|
||||
|
S-fimbriae
|
Sialyl galactoside units of cell surface glycoproteins
|
Glycoproteins
|
Vascular endothelial/epithelial cells of the choroid plexus, Ependyma cells lining the brain ventricles
|
NeuAc(a2-3)Gal(b1-4)Glc
|
Binding
|
||
|
Unknown
|
Sialylated type 2 chain conjugates (S-type 2-HSA)
|
Glycoproteins
|
Human serum albumin
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
||
|
Unknown
|
Sialyl Lewis x (SLex-HSA)
|
Glycoproteins
|
Human serum albumin
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
Displaying entries 271 - 280 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
