PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species ▲ | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
HA
|
Fucose
|
Monosaccharides
|
Intestinal epithelial cells (T84)
|
Fuc
|
Not Binding
|
||
Neurotoxin (type A/B)
|
GD2
|
Disialoglycosphingolipids
|
GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
GD2
|
Disialoglycosphingolipids
|
GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Botulinum neurotoxin
|
GT1b (complex with synaptotagmin II)
|
Trisialoglycosphingolipids
|
Presynaptic membrane of neuromuscular junction
|
Binding
|
|||
BoNT/B
|
GT1b (complex with synaptotagmin II)
|
Trisialoglycosphingolipids
|
Presynaptic membrane of neuromuscular junction
|
Binding
|
|||
Neurotoxin (type B)
|
Complex of synaptotagmin II and ganglioside GT1b or GD1a
|
Glycoconjugates
|
Binding
|
||||
Unknown
|
Complex of synaptotagmin II and ganglioside GT1b or GD1a
|
Glycoconjugates
|
Binding
|
||||
Toxin A
|
α-Gal on Fab of IgA(κ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
Toxin A
|
α-Gal on Fab of IgM(λ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
Unknown
|
α-Gal on Fab of IgA(κ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01