PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▲ | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
Alpha-Galactosyl paragloboside
|
Oligoglycosylceramides
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(a1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
GD1a
|
Disialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
GD1b
|
Disialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
Seminolipid (Sulfogalactosylglycerolipid)
|
Glycolipids
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(3SO4)(b1-3)-alkylacylglycerol
|
Binding
|
||
Unknown
|
GM3(NeuAc)
|
Monosialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
GM1
|
Monosialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
Sialyl-3-Paragloboside (S-3-PG; α2,3-sialylparagloboside)
|
Monosialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
GM2(NeuAc)
|
Monosialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01