PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▼ |
---|---|---|---|---|---|---|---|
Unknown
|
Lewis b (Leb-HSA)
|
Glycoproteins
|
Human serum albumin
|
Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
||
BBK32
|
GAGs (glycosaminoglycans)
|
Glycosaminoglycans
|
Binding
|
||||
BBK32
|
Fibronectin
|
Glycoproteins
|
Binding
|
||||
SV40
|
GM1
|
Monosialoglycosphingolipids
|
(broad range)
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Pyelonephritic adhesins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Kidney
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Cholera toxin
|
GM1
|
Monosialoglycosphingolipids
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
GM1
|
Monosialoglycosphingolipids
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Tetanus toxin (Hc fragment)
|
GT1b analog
|
Trisialoglycosphingolipids
|
Synapse
|
Binding
|
|||
Unknown
|
GT1b analog
|
Trisialoglycosphingolipids
|
Synapse
|
Binding
|
|||
Hemagglutinin
|
Human and avian receptors containing sialylated glycoconjugates
|
Glycoconjugates
|
Airways
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01