PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▲ | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Pertussis toxin
|
Fetuin
|
Glycoproteins
|
Bovine
|
Binding
|
|||
Unknown
|
Fetuin
|
Glycoproteins
|
Bovine
|
Binding
|
|||
Unknown
|
Gangliosides
|
Sialoglycosphingolipids
|
Bovine brain
|
Binding
|
|||
Unknown
|
unnamed ligand
|
Sialoglycosphingolipids
|
Bovine buttermilk
|
Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Neutrophil-activating proteins (150-kDa)
|
unnamed ligand
|
Sialoglycosphingolipids
|
Bovine buttermilk
|
Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Bovine buttermilk
|
Gal(b1-4)GlcNAc(b1-6)[Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Adhesins
|
Fetuin
|
Glycoproteins
|
Bovine erythrocytes
|
Binding
|
|||
Neutrophil-activating proteins (150-kDa)
|
I-active Sialyl lactoisooctaosylceramide
|
Sialoglycosphingolipids
|
Bovine erythrocytes
|
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
S-fimbriae (SfaA)
|
Seminolipid (Sulfogalactosylglycerolipid)
|
Glycolipids
|
Brain endothelial cells
|
Gal(3SO4)(b1-1)-alkylacylglycerol
|
Binding
|
||
S-fimbriae (SfaA)
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Brain endothelial cells
|
Gal(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01