PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▼ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
Horse erythrocytes
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
Unknown
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
K99
|
unnamed ligand
|
Oligosaccharides
|
NeuGc(a2-3)Gal(b1-4)Glc
|
Binding
|
|||
K99
|
unnamed ligand
|
Oligosaccharides
|
NeuGc(a2-3)Gal(b1-4)Glc
|
Binding
|
|||
Neutrophil-activating proteins (150-kDa)
|
NeuGc3-Lc4Cer (Sialyl lactotetraosylceramide)
|
Sialoglycosphingolipids
|
Rabbit thymus
|
NeuGc(a2-3)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
K99
|
GD1a(NeuGc)
|
Disialoglycosphingolipids
|
NeuGc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuGc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
GD1a(NeuGc)
|
Disialoglycosphingolipids
|
NeuGc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuGc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
GD1a(NeuGc/NeuAc)
|
Disialoglycosphingolipids
|
NeuGc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01