PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▲ | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Human colon adenocarcinoma cells (WiDr )
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
I-active Gal2-lactoisooctaosylceramide
|
Oligoglycosylceramides
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[Gal(a1-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
NeuGc3-nLc6Cer
|
Sialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
NeuGc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Unknown
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
Gb3 (Globotriaosylceramide; Trihexosylceramide; Pk antigen (GSL); CTH)
|
Oligoglycosylceramides
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
20K-fimbriae
|
GlcNAc sequence
|
Saccharides
|
Human colon carcinoma Caco-2 cell line
|
GlcNAc
|
Binding
|
||
Unknown
|
Galactosylceramide (or derivative)
|
Monoglycosylceramides
|
Human colon epithelial HT29 cells
|
Gal(b1-1)Cer
|
Binding
|
||
Toxin A
|
unnamed ligand
|
Oligosaccharides
|
Human colonic cells
|
Gal(a1-3)Gal(b1-4)GlcNAc
|
Binding
|
||
C-terminal domain of toxin A molecules
|
unnamed ligand
|
Oligosaccharides
|
Human colonic cells
|
Gal(a1-3)Gal(b1-4)GlcNAc
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01