PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▼ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
FimH
|
Mannotriose
|
Oligosaccharides
|
Man(a1-3)[Man(a1-6)]Man
|
Binding
|
|||
Type 1-pili
|
Mannotriose
|
Oligosaccharides
|
Man(a1-3)[Man(a1-6)]Man
|
Binding
|
|||
Type 1-fimbriae
|
trisaccharide: Man(a1-3)Man(b1-4)GlcNAc
|
Oligosaccharides
|
Patient with urinary tract infection
|
Man(a1-3)Man(b1-4)GlcNAc
|
Binding
|
||
Type 1-fimbriae
|
trisaccharide: Man(a1-3)Man(b1-4)GlcNAc
|
Oligosaccharides
|
Man(a1-3)Man(b1-4)GlcNAc
|
Binding
|
|||
Type 1-fimbriae
|
unnamed ligand
|
Oligosaccharides
|
Urine
|
Man(a1-3)Man(a1-6)Man
|
Binding
|
||
CBPs (carbohydrate-binding proteins)
|
High mannose glycans containig the Manα1-2Manα1-6Manα1-6 structure
|
Saccharides
|
Man(a1-2)Man(a1-6)Man(a1-6)
|
Binding
|
|||
Adhesins
|
D-Mannose
|
Monosaccharides
|
Type-II lung cells, Vascular endothelial cells
|
Man
|
Binding
|
||
Type 1-pili
|
D-Mannose
|
Monosaccharides
|
Bladder epithelium
|
Man
|
Binding
|
||
Unknown
|
Mannose
|
Monosaccharides
|
Chicken embryo related cells
|
Man
|
Binding
|
||
FimCH-chaperone-adhesin complex
|
D-Mannose
|
Monosaccharides
|
Bladder epithelium
|
Man
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01