PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
F1C
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Synthetic
|
Gal(a1-4)Gal(b1-1)Cer
|
Not Binding
|
||
F1C
|
Lewis a (Lea) (GSL)
|
Glycosphingolipids
|
Human meconium
|
Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
Glucosylceramide (d18:1/t18:0-16:0-24:0)
|
Monoglycosylceramides
|
Porcine kidney
|
Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
Galactosylceramide (d18:1-h18:0-h24:0)
|
Monoglycosylceramides
|
Sigma
|
Gal(b1-1)Cer
|
Not Binding
|
||
F1C
|
Glucosylceramide (t18:0-h18:0)
|
Monoglycosylceramides
|
Rat intestine
|
Glc(b1-1)Cer
|
Binding
|
||
F1C
|
H5 type 2 pentaglycosylceramide (neolacto-series)
|
Oligoglycosylceramides
|
Human erythrocytes
|
Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Guinea pig erythrocytes
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Human neutrophils
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Human erythrocytes
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
F1C
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Dog intestine
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01