PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature ▲ | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Adhesins
|
Fetuin
|
Glycoproteins
|
Human leukocytes, Human neutrophils
|
Binding
|
|||
K99
|
Mucin
|
Glycoproteins
|
Intestinal cells
|
Binding
|
|||
Type 4-pili
|
Thyroglobulin containing N-linked complex and hybrid (oligomannosidic) glycans
|
Glycoproteins
|
Bovine
|
Binding
|
|||
Pertussis toxin
|
Fetuin
|
Glycoproteins
|
Bovine
|
Binding
|
|||
Unknown
|
Salivary glycoprotein (gp340)
|
Glycoproteins
|
Human stomach associated with gastritis and peptic ulcer disease
|
Binding
|
|||
VP1 (RGD peptide)
|
αvβ3 Integrin (independent of expression of Heparan sulfate on cell-sulface)
|
Glycoproteins
|
Extracellular matrix (ECM)
|
Binding
|
|||
RGD motif of the VP1 GH loop
|
αvβ6 Integrin
|
Glycoproteins
|
Epithelial cells
|
Binding
|
|||
Unknown
|
Salivary glycoprotein (gp340)
|
Glycoproteins
|
Neonatal meningitis
|
Binding
|
|||
Adhesins
|
MUC1 mucin
|
Glycoproteins
|
Surface of chinese hamster ovary (CHO) cells
|
Binding
|
|||
SspA (Antigen I/II)
|
Salivary glycoprotein
|
Glycoproteins
|
Saliva
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01