PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▼ | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
GD1a(NeuGc/NeuAc)
|
Disialoglycosphingolipids
|
NeuGc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Viral protein
|
NeuAc/GlcNAc/(GlcNAc)n side chains of WGA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
NeuAc/GlcNAc/(GlcNAc)n
|
Binding
|
||
Unknown
|
GT3
|
Trisialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
F1C
|
Disialosyl lacto-N-nor-hexaosylceramide (DSnHC)
|
Sialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-3)[Gal(b1-4)GlcNAc]2(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
Neutrophil-activating proteins (150-kDa)
|
DSPG (Disialosyl paragloboside)
|
Disialoglycosphingolipids
|
Human erythrocytes
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
DSPG (Disialosyl paragloboside)
|
Disialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
Heat-labile enterotoxin
|
DSPG (Disialosyl paragloboside)
|
Disialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
Unknown
|
DSPG (Disialosyl paragloboside)
|
Disialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
Cholera toxin
|
DSPG (Disialosyl paragloboside)
|
Disialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
F1C
|
DSPG (Disialosyl paragloboside)
|
Disialoglycosphingolipids
|
NeuAc(a2-8)NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01